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Last updated: 2025-11-11

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Knit directory: dge-analysis/

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Repository version: 17c660d

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Ignored files:
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Unstaged changes:
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Staged changes:
    Modified:   dge-analysis/analysis/_site.yml

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These are the previous versions of the repository in which changes were made to the R Markdown (dge-analysis/analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	bd7390c	Brandon M Wilk	2025-11-10	repo address updates
Rmd	9f4f1fd	GitHub	2025-11-06	Reorganize repository. (#4)
html	9f4f1fd	GitHub	2025-11-06	Reorganize repository. (#4)
html	a6247eb	GitHub	2025-07-23	Prepare for PhysGen submission. (#2)
html	05f5502	sdhutchins	2023-08-16	Build site.
html	482a8a9	sdhutchins	2023-08-09	Build site.
html	849a423	sdhutchins	2023-07-27	Build site.
html	752cbf3	sdhutchins	2023-07-27	Update metadata.
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html	52f089b	sdhutchins	2023-06-19	Build site.

This site presents a differential gene expression analysis conducted by CGDS on 23 individuals diagnosed with ME/CFS using bulk RNA-seq.

Data was processed with the nf-core/rnaseq pipeline and quantified using Salmon to identify transcriptional changes related to immune and metabolic dysregulation.

Home

Study Design and Differential Expression Results

Results and Data Availability

License